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Organic : Oil vs Crystals
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 Message 1 of 2 in Discussion 
From: MSN NicknameMikeKL5  (Original Message)Sent: 3/16/2005 1:14 PM
Good morning Steve and others,
 
     I'm writing to find out if anyone can explain a phenomena that I've observed while working on my research. I synthesized about 50 mg of 1-(3',5'-O-diacetyl-B-D-ribofuranosyl)-uracil. (This molecule is uridine with acetyl groups replacing the 3' and 5' hydroxyls). I was able to obtain this product as a white, crystalline solid.
     If I dissolve this compound in duterated chloroform, and then evaporate the solvent, the compound does not crystallize. I obtain it as an oil. If I dissolve the compound in dichloromethane, and then evaporate the solvent, the compound doesn't crystallize. Again, I obtain it as a transparent oil. Now, if I dissolve the compound in dichloromethane, and then add about twice the volume of petroleum ether, the compound precipitates as a white solid. I can evaporate the solvent and obtain beautiful, white crystals.
     Why on earth is the compound coming out as an oil from deuterated chloroform and straight dichloromethane? Why doesn't it precipitate out as a crystalline solid as the volume of the solvent decreases?
 
Thanks in advance for any help,
MikeKL5 


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 Message 2 of 2 in Discussion 
From: MSN Nickname·Steve·Sent: 3/16/2005 11:54 PM
Hi Mike, I've seen that happen with some compounds too.  Sometimes, crystallizations work better in greater volumes as you have with your "good solvent / bad solvent" system with dichloromethane and pet ether, especially since you can evaporate most of the dichloromethane selectively from the mixture.  Some compounds crystallize readily upon simple solvent evaporation, while other form the oily residue you're getting.  Left in vacuum, this residue would probably solidify eventually.  This behavior may simply be characteristic of some solids.  Is your solid product truly crystalline or microcrystalline (well-formed crystals or microcrystals; may have to verify with a microscope), or is it actually just precipitating as an amorphous solid?
 
Given this behavior, count yourself lucky that you are able to isolate your compound in dry solid form!  I've worked with some compounds that simply refused to precipitate in solid form no matter what crystallization methods I tried.
 
 
Steve